PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.P81AY
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 644aa    MW: 71318.8 Da    PI: 7.5464
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.P81AYgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.45.4e-18309408198
                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  f+k l+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++l +
  Araip.P81AY 309 FEKMLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PEGKLIM 404
                  89**************************555567778***************9989999999***9.********************876.7777777 PP

                  EEE- CS
           B3  95 kvfr 98 
                  ++++
  Araip.P81AY 405 GFRK 408
                  7765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-29301417IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.23E-19306408IPR015300DNA-binding pseudobarrel domain
CDDcd100177.52E-22307408No hitNo description
SMARTSM010192.7E-19309409IPR003340B3 DNA binding domain
PfamPF023621.6E-15309408IPR003340B3 DNA binding domain
PROSITE profilePS5086311.096309410IPR003340B3 DNA binding domain
PROSITE profilePS5105013.497574624IPR011124Zinc finger, CW-type
PfamPF074969.8E-11579621IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MESRSCMNVV CATLTSIQWR KGWALRSGEF ADLCDKCGSA YEQSTFCEKF HSNDSGWREC  60
VSCGKRLHCG CIASRSQLEL LDSGGVAGTE KPTGSGASKI KNVSEQLCPS LANQLNVRGM  120
QVGHSTDSDG LRWWLKPHNP DANVPFPEIK TEEGLPSTAE LGSQLISQFR CKSNGSSRVA  180
KSDNCQADME MQDIYESLAH ANLSMTLASP SGNPNPFHSA IADEREQSKT SPPLLLGSRS  240
RHLLPKPPRS SLGSSLETNA AMVSQIRVAR PPAEGRGRNQ LLPRYWPRIT DQELQQISGD  300
SNSTIVPLFE KMLSASDAGR IGRLVLPKAC AEAYFPPISQ PEGLPLRIQD VKGKEWVFQF  360
RFWPNNNSRM YVLEGVTPCI QSMQLQAGDT VTFSRMDPEG KLIMGFRKAT NSAAVQESHP  420
SNMPNGSHSS ETSYSGVYEN LPILSGYSGL LQSQKGSSES PLNTLSKKWN SAGGDMNWHN  480
IEIPEKRTRE GSFLPPVLVP EKKKTRNIGS KSKRLLIDSQ DALELKLTWE EAQDLLRPPP  540
TAKPSIVMIE DHVFEEYEEP PVFGKKSIFV ARSAGINEQW TQCDNCSKWR KLPVDVLVPP  600
KWTCADNLWD QSRRACSAPD ELSPREMDNL LRLIKGISPP LEFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A8e-1630841213120DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016184086.10.0PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X1
RefseqXP_016184087.10.0PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X1
RefseqXP_016184088.10.0PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X1
SwissprotQ5CCK40.0VAL2_ARATH; B3 domain-containing transcription repressor VAL2
TrEMBLK7KCN00.0K7KCN0_SOYBN; Uncharacterized protein
STRINGGLYMA03G04330.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110183239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1